How to run QGreenland Core¶
This project uses Docker and
docker-compose to run each of its components as
services. See Docker’s Getting started guide.
The docker-compose stack runs Luigi (with visualizer at port 8082) as a service for running tasks, as well as NGINX (port 80, 443) for hosting outputs.
How to start the service stack¶
In order to download data behind Earthdata Login, you must
following environment variables on the docker host before starting the stack:
Developers at NSIDC may use the values stored in Vault at the following path:
nsidc/apps/qgreenland. Those outside of NSIDC must use their personal
Earthdata Login credentials. New users to Earthdata can register here:
Create a docker-compose
ln -s docker-compose.local.yml docker-compose.override.yml
WARNING: Docker Desktop for OSX has some “gotchas”. Running with “Use gRPC FUSE for file sharing” enabled is recommended. You may see indefinite hangs otherwise. Please reference the Docker documentation for more info:
Start the stack with docker-compose:
docker-compose up -d
How to run processing pipelines with the QGreenland CLI¶
The primary entrypoint for the CLI is
./scripts/cli.sh. This runs the CLI
program inside the
luigi container, allowing us to kick off pipelines or
cleanup data from standard locations without risking destructive actions on the
To run the full pipeline:
To run in parallel:
./scripts/cli.sh run --workers=4
To run only the layers you care about (plus the background, useful for testing, but the final output will not be zipped):
./scripts/cli.sh run \ --include="background" \ --include="*my_layerid_mask*"
Collaborators outside NSIDC may want to run QGreenland pipeline without “manual access” layers that require difficult or impossible additional steps to prepare input data. See Assets documentation to learn more about “manual access” assets.
./scripts/cli.sh run \ --exclude-manual-assets
Inclusion and exclusion flags can be combined arbitrarily. When
--exclude are used together, the final result is the set of layers which are
included or not excluded. This is different from the set of layers which are
included and not excluded.
To cleanup outputs while developing a new layer (deletes WIP and released
layers matching mask, WIP and released packages; see
--help for more):
./scripts/cli.sh cleanup --dev '*my_layerid_mask*'
See the Luigi documentation for more information on running Luigi if you want to do anything not documented here.
How to debug a Luigi pipeline¶
breakpoint() anywhere in the pipeline code, then run the pipeline
with 1 worker (the default) and whichever layer(s) you want to debug.